Reference datasets
Pawsey hosts a number of life science reference datasets centrally to save users from repeatedly downloading the same common datasets. These are hosted on /scratch/references/ . Below is a list of datasets:
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Arabidopsis thalian
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Broad hg19 bundle
Broad hg38 bundle
GRCh38
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Interproscan Version v5.56-89.0
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Includes:
Broad mm10 bundle
GRCm38
mm10
RNA_M25
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Sarek nf-core pipeline reference
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Useful Documentation
Applying for compute with the ABLeS Scheme:
https://www.biocommons.org.au/ables
Using the dedicated Workflow Nodes:
How to Run Workflows on the Workflow Nodes
Interactive computing:
How to Run JupyterLab via Conda
How to Run JupyterLab via Container
Conda:
Conda and Reproducible Installations
How to Configure Conda to Avoid Quota Issues
Installing your own modules:
SHPC (Singularity Registry HPC)