Life Science and Bioinformatics Landing Page

Useful Documentation

Applying for compute with the ABLeS Scheme:

https://www.biocommons.org.au/ables

Using the dedicated Workflow Nodes:

How to Run Workflows on the Workflow Nodes

Nextflow

Interactive computing:

How to Run JupyterLab via Conda

How to Run JupyterLab via Container

Run RStudio Interactively

Conda:

Conda and Reproducible Installations

Conda Installation and Configuration to Avoid Quota Issues

Installing your own modules:

SHPC (Singularity Registry HPC)

Centrally hosted biology reference datasets:

Reference Datasets

General Setonix Guide:

Setonix User Guide

Running with GPUs:

Setonix GPU Partition Quick Start

Structural Biology Tools:

Using AlphaFold2 on AMD GPUs

Using Boltz v.1.0.0 on AMD GPUs

Using ColabFold on AMD GPUs

Using ProteinMPNN on AMD GPUs

Using RFDiffusion on AMD GPUs

Service Unit Calculator:

https://pawseysc.github.io/su-calculator/