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There are multiple filesystems mounted to each of Pawsey's supercomputers. Each of these filesystems are designed for particular use cases. This page provides a detailed description of these filesystems. |
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The /software filesystem is a Lustre file system with much higher throughput than /home. It is intended for software installations and Slurm batch script templates. Each project has an associated directory on the filesystem whose path is /software/projects/<project>. Within a project directory, each project member has his or her own directory whose full path, /software/projects/<project>/<username>, is contained in the MYSOFTWARE environment variable.
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The specific bioinformatics reference datasets available are:
- 10x single cell gene expression
- 10x spatial gene expression
- Alphafold
- Arabidopsis thaliana
- Blast+ database (regularly updated)
- Diamond
- Human Broad bundle hg19, Broad bundle hg38, and GRCh38
- Interproscan-5.56-89.0
- Metagenome_atlas_2.9
- Mouse Broad bundle mm10, NCBI MM10, UCSC GRCm38, RNA M25
- Qiime
- Sarek
- VEP
For more information, see the Life Science and Bioinformatics page.
If you would like to request addition of a new reference dataset, please email the Pawsey Helpdesk help@pawsey.org.au
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