...
| Column |
|---|
|
| Code Block |
|---|
| language | bash |
|---|
| theme | DJango |
|---|
| title | Example command to auto-update R packages |
|---|
| # Load the new R module version
$ module load r/4.2.1
# Open an R session
R
#
installed_packages <- installed.packages()
write.csv(installed_packages, file = "installed_packages.csv")
|
|
Python virtual environment
...
Once you are satisfied with the new builds, please clean up the old builds
| Column |
|---|
| Code Block |
|---|
| language | bash |
|---|
| theme | Emacs |
|---|
| title | Uninstall old spack installed packages |
|---|
| module swap pawseyenv pawseyenv/2022.11
# load the older spack version
module load spack/0.17.0
# look for modules within your $MYSOFTWARE installation
hashlist=($(ls -lR ${MYSOFTWARE}/setonix/modules/zen3/| grep .lua | sed "s/.lua//g" | sed "s/-/ /g"| awk '{print $NF}'))
for h in ${hashlist[@]}
do
spack uninstall /${h}
done
spack clean -a
|
|
...